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最近の主な発表論文

  • 2021
    • Yagi H, Tamura K, Matsushita T, Shimada T. (2021) Spatiotemporal relationship between auxin dynamics and hydathode development in Arabidopsis leaf teeth. Plant Signal. Behav., in press.

  • 2020
    • Yagi H, Nagano AJ, Kim J, Tamura K, Mochizuki N, Nagatani A, Matsushita T, Shimada T. (2020) Fluorescent protein-based imaging and tissue-specific RNA-seq analysis of Arabidopsis hydathodes. Journal of Experimental Botany, 72, 1260-1270.
    • Sakoda K, Yamori W, Shimada T, Sugano SS, Hara-Nishimura I, Tanaka Y. (2020) Higher Stomatal Density Improves Photosynthetic Induction and Biomass Production in Arabidopsis under Fluctuating Light. Front. Plant Sci., 11, 1609.
    • Izuishi Y, Isaka N, Li H, Nakanishi K, Kageyama J, Ishikawa K, Shimada T, Masuta C, Yoshikawa N, Kusano H, Yazaki K. (2020) Apple latent spherical virus (ALSV)-induced gene silencing in a medicinal plant, Lithospermum erythrorhizon. Scientific Reports, 10, 1-9.
    • Takagi J, Kimori Y, Shimada T, Hara-Nishimura I. (2020) Dynamic Capture-and-Release of Endoplasmic Reticulum Exit Sites by Golgi Stacks in Arabidopsis. iScience, 101265.
    • Ishishita K, Higa T, Tanaka H, Inoue SI, Chung A, Ushijima T, Matsushita T, Kinoshita T, Nakai M, Wada M, Suetsugu N, Gotoh E. (2020) Phototropin 2 contributes to the chloroplast avoidance response at the chloroplast-plasma membrane interface. Plant Physiol., 183, 304-316.
    • Ichino T, Maeda K, Hara-Nishimura I, Shimada T. (2020) Arabidopsis ECHIDNA protein is involved in seed coloration, protein trafficking to vacuoles, and vacuolar biogenesis. Journal of Experimental Botany, 71, 3999-4009.
    • Ishikawa K, Tamura K, Fukao Y, Shimada T. (2020) Structural and functional relationships between plasmodesmata and plant endoplasmic reticulum–plasma membrane contact sites consisting of three synaptotagmins. New Phytologist, 226, 798-808.

  • 2019
    • Sakaguchi J, Matsushita T, Watanabe Y. (2019) DWARF4 accumulation in root tips is enhanced via blue light perception by cryptochromes. Plant, Cell & Environment, 42, 1615-1629.
    • Matsushita T (2019) Regulation of Alternative Splicing by Phytochrome. In Phytochromes (pp. 143-148). Humana, New York, NY.
    • Shimada TL, Shimada T, Okazaki Y, Higashi Y, Saito K, Kuwata K, Oyama K, Kato M, Ueda T, Nakano A, Ueda T, Takano Y, Hara-Nishimura I. (2019) HIGH STEROL ESTER 1 is a key factor in plant sterol homeostasis. Nature Plants, 5, 1154-1166.
    • Nakazaki A, Yamada K, Kunieda T, Tamura K, Hara-Nishimura I, Shimada T. (2019) Biogenesis of leaf endoplasmic reticulum body is regulated by both jasmonate-dependent and independent pathways. Plant Signal. Behav.,14, 1622982.
    • Maeda K, Kunieda T, Tamura K, Hatano K, Hara-Nishimura I, Shimada T. (2019) Identification of periplasmic root-cap mucilage in developing columella cells of Arabidopsis thaliana. Plant Cell Physiol., 60, 1296-1303.
    • Yoshinari A, Hosokawa T, Amano T, Beier MP, Kunieda T, Shimada T, Hara-Nishimura I, Naito S, Takano J. (2019) Polar Localization of the Borate Exporter BOR1 Requires AP2-Dependent Endocytosis.Plant Physiol., 179, 1569-1580.
    • Nakazaki A, Yamada K, Kunieda T, Sugiyama R, Hirai MY, Tamura K, Hara-Nishimura I, Shimada T. (2019) Leaf ER bodies identified in Arabidopsis rosette leaves are involved in defense against herbivory. Plant Physiol., 179, 1515-1524.

  • 2018
    • Gotoh E, Suetsugu N, Higa T, Matsushita T, Tsukaya H, Wada M. (2018) Palisade cell shape affects the light-induced chloroplast movements and leaf photosynthesis. Scientific Reports, 8, 1-9.
    • Ishikawa K, Tamura K, Shimada T. (2018) Subcellular localisation of an endoplasmic reticulum-plasma membrane tethering factor, SYNAPTOTAGMIN 1, is affected by fluorescent protein fusion. Plant Signal. Behav., 13, e1547577.
    • Ishikawa K, Tamura K, Ueda H, Ito Y, Nakano A, Hara-Nishimura I, Shimada T. (2018) Synaptotagmin-associated endoplasmic reticulum-plasma membrane contact sites are localized to immobile ER tubules. Plant Physiol., 178, 641-653
    • Shimada T, Kunieda T, Sumi S, Koumoto Y, Tamura K, Hatano K, Ueda H, Hara-Nishimura I. (2018) The AP-1 Complex is Required for Proper Mucilage Formation in Arabidopsis Seeds. Plant Cell Physiol., 59, 2331-2338
    • Sugano SS, Nishihama R, Shirakawa M, Takagi J, Matsuda Y, Ishida S, Shimada T, Hara-Nishimura I, Osakabe K, Kohchi T. (2018) Efficient CRISPR/Cas9-based genome editing and its application to conditional genetic analysis in Marchantia polymorpha. PLoS ONE, 13, e0205117.
    • Ueda H, Ohta N, Kimori Y, Uchida T, Shimada T, Tamura K, Hara-Nishimura I. (2018) Endoplasmic Reticulum (ER) Membrane Proteins (LUNAPARKs) Are Required for Proper Configuration of the Cortical ER Network in Plant Cells. Plant Cell Physiol., 59, 1931-1941
    • Shimada T, Fuji K, Ichino T, Teh OK, Koumoto Y, Hara-Nishimura I. (2018) GREEN FLUORESCENT SEED, to Evaluate Vacuolar Trafficking in Arabidopsis Seeds. In Plant Vacuolar Trafficking (pp. 1-7). Humana Press, New York, NY.
    • Shimada T, Takagi J, Ichino T, Shirakawa M, Hara-Nishimura I. (2018) Plant Vacuoles. Annu Rev Plant Biol., 29, 123-145.
    • Hatsugai N, Nakatsuji A, Unten O, Ogasawara K, Kondo M, Nishimura M, Shimada T, Katagiri F, Hara-Nishimura I. (2018) Involvement of Adapter Protein Complex 4 in Hypersensitive Cell Death Induced by Avirulent Bacteria. Plant Physiol., 176, 1824-1834.

  • 2017
    • Ushijima T, Hanada K, Gotoh E, Yamori W, Kodama Y, Tanaka H, Kusano M, Fukushima A, Tokizawa M, Yamamoto YY, Tada Y, Suzuki Y, Matsuhita T. (2017) Light controls protein localization through phytochrome-mediated alternative promoter selection. Cell, 171, 1316-1325.
    • Oota M, Gotoh E, Endo M, Ishida T, Matsushita T, Sawa S. (2017) Negative phototaxis in M. incognita. International Journal of Biology, 9.
    • Wang S, Yoshinari A, Shimada T, Hara-Nishimura I, Mitani-Ueno N, Ma JF, Naito S, Takano J. (2017) Polar localization of the NIP5; 1 boric acid channel is maintained by endocytosis and facilitates boron transport in Arabidopsis roots. The Plant Cell 29, 824-842.
    • Sakai Y, Sugano SS, Kawase T, Shirakawa M, Imai Y, Kawamoto Y, Sugiyama H, Nakagawa T, Hara-Nishimura I, Shimada T. (2017) The chemical compound bubblin induces stomatal mispatterning in Arabidopsis by disrupting the intrinsic polarity of stomatal lineage cells. Development, 144, 499-506.
    • Shimada T, Hara-Nishimura I. (2017) Isolation of Protein Storage Vacuoles and Their Membranes. Methods Mol Biol., 1511, 163-168.

  • 2016
    • Ishishita K, Suetsugu N, Hirose Y, Higa T, Doi M, Wada M, Matsushita T, Gotoh E. (2016) Functional characterization of blue-light-induced responses and PHOTOTROPIN 1 gene in Welwitschia mirabilis. Journal of plant research, 129, 175-187.
    • Shirakawa M, Ueda H, Shimada T, Hara-Nishimura I. (2016) FAMA: A Molecular Link between Stomata and Myrosin Cells. Trends Plant Sci., 21, 861-871.
    • Shirakawa M, Ueda H, Shimada T, Hara-Nishimura I. (2016) Myrosin cells are differentiated directly from ground meristem cells and are developmentally independent of the vasculature in Arabidopsis leaves. Plant Signal. Behav., 11, e1150403.
    • Ueda H, Yokota E, Kuwata K, Kutsuna N, Mano S, Shimada T, Tamura K, Stefano G, Fukao Y, Brandizzi F, Shimmen T, Nishimura M, Hara-Nishimura I. (2016) Phosphorylation of the c terminus of rhd3 has a critical role in homotypic er membrane fusion in Arabidopsis. Plant Physiol., 170, 867-880.
    • Fuji K, Shirakawa M, Shimono Y, Kunieda T, Fukao Y, Koumoto Y, Takahashi H, Hara-Nishimura I, Shimada T. (2016) The adaptor complex AP-4 regulates vacuolar protein sorting at the trans-golgi network by interacting with VACUOLAR SORTING RECEPTOR1. Plant Physiol., 170, 211-219.

  • 2015
    • Okamoto K, Ueda H, Shimada T, Tamura K, Koumoto Y, Tasaka M, Morita MT, Hara-Nishimura I. (2016) An ABC transporter B family protein, ABCB19, is required for cytoplasmic streaming and gravitropism of the inflorescence stems. Plant Signal. Behav., 11, e1010947.
    • Okamoto K, Ueda H, Shimada T, Tamura K, Kato M, Tasaka M, Morita MT, Hara-Nishimura I. (2015) An actin-myosin XI cytoskeleton regulates organ straightening adjust plant posture. Nature Plants, 15031.
    • Teh OK, Hatsugai N, Tamura K, Fuji K, Tabata R, Yamaguchi K, Shingenobu S, Yamada M, Hasebe M, Sawa S, Shimada T, Hara-Nishimura I. (2015) BEACH-Domain Proteins Act Together in a Cascade to Mediate Vacuolar Protein Trafficking and Disease Resistance in Arabidopsis. Mol. Plant, 8, 389-398.
    • Kawase T, Sugano SS, Shimada T, Hara-Nishimura I. (2015) A direction-selective local-thresholding method, DSLT, in combination with a dye-based method for automated three-dimensional segmentation of cells and airspaces in developing leaves. Plant J., 81, 357-366.
    • Shirakawa M, Ueda H, Shimada T, Kohchi T, Hara-Nishimura I. (2015) Myrosin cell development is regulated by endocytosis machinery and PIN1 polarity in leaf primordia of Arabidopsis thaliana. The Plant Cell, 26, 4448-4461.

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